fix(web): stop tool-group flashing and config-menu closure on updates

Reuse existing tool-group DOM elements in rebuildTranscript instead of
tearing them down — preserves CSS transition state and focus. Defer
config-menu DOM rebuild while the menu is open so <select> dropdowns
survive background state updates.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

web/src/structured.ts

@@ -85,10 +85,10 @@ export function createStructuredConnection(
       <div class="structured-main">
         <div class="structured-scroll">
           <div class="structured-rows"></div>
-        </div>
-        <div class="structured-activity" role="status" aria-live="polite" hidden>
-          <span class="structured-activity-pulse" aria-hidden="true"></span>
-          <span class="structured-activity-text">Thinking</span>
+          <div class="structured-activity" role="status" aria-live="polite" hidden>
+            <span class="structured-activity-pulse" aria-hidden="true"></span>
+            <span class="structured-activity-text">Thinking</span>
+          </div>
         </div>
         <form class="structured-composer">
           <button type="button" class="btn btn-ghost btn-icon structured-attach" aria-label="Attach files" title="Attach files (up to 20 MiB each)">
@@ -486,6 +486,7 @@ export function createStructuredConnection(
     const liveGroupIds = new Set([...groups.keys()]);
     for (const id of expandedGroupIds) if (!liveGroupIds.has(id)) expandedGroupIds.delete(id);
 
+    const prevGroupEls = new Map(groupEls);
     rowEls.clear();
     groupEls.clear();
     const children: HTMLElement[] = [];
@@ -504,23 +505,37 @@ export function createStructuredConnection(
           rowEls.set(memberRow.id, memberEl);
           return [memberEl];
         });
-        const groupEl = buildToolGroup(
-          groupId,
-          group.rows,
-          memberEls,
-          expandedGroupIds.has(groupId),
-          (expanded) => {
-            if (expanded) expandedGroupIds.add(groupId);
-            else expandedGroupIds.delete(groupId);
-            settleDisclosureLayout();
-          },
-          group.toolCount,
-        );
-        if (group.rows.some((r) => enteringRowIds.has(r.id))) {
-          groupEl.classList.add("st-row-enter");
+
+        // Reuse existing group element when possible — avoids tearing down
+        // and recreating the wrapper, which restarts CSS transitions (visible
+        // flash) and destroys keyboard/focus state.
+        const existing = prevGroupEls.get(groupId);
+        if (existing) {
+          const titleEl = existing.querySelector<HTMLElement>(".st-tool-group-title");
+          if (titleEl) titleEl.textContent = `${group.toolCount} tool calls`;
+          const inner = existing.querySelector<HTMLElement>(".st-disclosure-inner");
+          if (inner) inner.replaceChildren(...memberEls);
+          groupEls.set(groupId, existing);
+          children.push(existing);
+        } else {
+          const groupEl = buildToolGroup(
+            groupId,
+            group.rows,
+            memberEls,
+            expandedGroupIds.has(groupId),
+            (expanded) => {
+              if (expanded) expandedGroupIds.add(groupId);
+              else expandedGroupIds.delete(groupId);
+              settleDisclosureLayout();
+            },
+            group.toolCount,
+          );
+          if (group.rows.some((r) => enteringRowIds.has(r.id))) {
+            groupEl.classList.add("st-row-enter");
+          }
+          groupEls.set(groupId, groupEl);
+          children.push(groupEl);
         }
-        groupEls.set(groupId, groupEl);
-        children.push(groupEl);
         continue;
       }
       // Resolved approvals not absorbed into a tool group are hidden — the
@@ -635,12 +650,14 @@ export function createStructuredConnection(
     }
   }
 
+  let configDirty = false;
   function renderConfig(): void {
     const options = sessionConfigOptions();
     configEl.hidden = options.length === 0;
     if (options.length === 0) {
       configMenu.hidden = true;
       configTrigger.setAttribute("aria-expanded", "false");
+      configDirty = false;
       return;
     }
     const ordered = [...options].sort((a, b) => {
@@ -654,6 +671,15 @@ export function createStructuredConnection(
     configTrigger.title = summary;
     configTrigger.setAttribute("aria-label", `Session settings. ${summary.replaceAll("\n", ". ")}`);
     configTrigger.disabled = configBusy;
+
+    // When the menu is open and the user is interacting (not mid-change),
+    // skip the DOM rebuild so open <select> dropdowns aren't destroyed.
+    // Mark dirty so the next open rebuilds with fresh data.
+    if (!configMenu.hidden && !configBusy) {
+      configDirty = true;
+      return;
+    }
+    configDirty = false;
     configMenu.replaceChildren();
     for (const option of ordered) {
       const row = document.createElement("label");
@@ -717,6 +743,7 @@ export function createStructuredConnection(
 
   function renderActivity(): void {
     const active = state.turn.responding || state.turn.thinking || awaitingBeginGeneration !== null;
+    const wasHidden = activityEl.hidden;
     activityEl.hidden = !active;
     if (!active) {
       optimisticTurnStartedAt = null;
@@ -739,6 +766,11 @@ export function createStructuredConnection(
     }
     activityText.textContent = parts.join(" · ");
     if (activityTimer === null) activityTimer = window.setInterval(renderActivity, 1_000);
+    // Activity lives inside the scroll area; nudge scroll when it first appears.
+    if (wasHidden && followingBottom) {
+      beginTranscriptLayout(true);
+      finishTranscriptLayout();
+    }
   }
 
   function reconcileAwaitingBegin(): void {
@@ -779,6 +811,7 @@ export function createStructuredConnection(
 
   configTrigger.addEventListener("click", () => {
     const opening = configMenu.hidden;
+    if (opening && configDirty) renderConfig();
     configMenu.hidden = !opening;
     configTrigger.setAttribute("aria-expanded", String(opening));
   });

web/src/styles.css

@@ -2318,9 +2318,7 @@ input.leaf-rename:focus {
   gap: var(--sp-2);
   min-height: 30px;
   padding: var(--sp-1) var(--sp-3);
-  border-top: 1px solid var(--border);
   color: var(--muted);
-  background: var(--surface-2);
   font-size: var(--fs-11);
   font-variant-numeric: tabular-nums;
 }